Skip to Main Content
MCPHS Library Logo

EndNote: Organize Your Library

Learn to set up and use EndNote 7.

Creating Groups

Groups are what keep your EndNote library organized, much like a filing system. You must create a group and assign references to the group manually. There are three group terms that are important to learn when organizing your library:

  • Group - A custom list of references. 
  • Smart Group - A group based on a search of the EndNote library. Because it is based on a search that is constantly updated, you do not add references to a smart group manually.
  • Groups Set - References are organized in groups and groups are organized in group sets. Group sets can be moved up or down in the Groups Panel, while groups underneath group sets are always in alphabetical order. 

Creating a Group

1. In EndNote, select Create Group from the Groups menu. A new folder will appear in the My Groups section of the Groups Panel. Name the new group and press the Enter or Return key when finished.

To create a group, select the Create Group option found under the  Groups drop-down menu. This will open a new folder in the My Groups section of the Groups Panel. You can name the new group and save the entry by pressing Enter or Return.

2. Select the references you want to add to the custom group. You can select multiple references by holding down the Command key while clicking on each reference with the mouse cursor. The selected references will be highlighted in blue.

3. Drag and drop the selected references into the group folder. 

Creating a Smart Group

1. In EndNote, select Create Smart Group from the Groups menu. A window will appear. Name the new group in the first box labeled Smart Group Name.

2. Build your search strategy for the group just as you would in a library database. Click the Create button.

To create a Smart Group, you can find the option within the Groups menu. You can name the new group.You will design your search strategy for the group similar to how you would in a library database. Be sure to click the Create button to ensure your progress is saved. When you search for keywords in your library, they will bed added to your smart group. As new references become available, they will be added automatically to this new group.

3. All of the references in your library that contain the keywords found within your search strategy are now added to the smart group. New references will be added to this group set automatically as they become available.

Groups are what keep your EndNote library organized, much like a filing system. You must create a group and assign references to the group manually. There are three group terms that are important to learn when organizing your library:

  • Group - A custom list of references. 
  • Smart Group - A group based on a search of the EndNote library. Since it is based on a search that is constantly updated, you do not add references to a smart group manually. References are added to the smart group automatically based on the search parameters that are set.
  • Groups Set - References are organized in groups and groups are organized in group sets. Group sets can be moved up or down in the Groups Panel, while groups underneath group sets are always in alphabetical order. 

Creating a Group

1. In EndNote, select Create Group from the Groups menu. A new folder will appear in the My Groups section of the Groups Panel. Name the new group and press the Enter or Return key when finished.

Options to create and interact with groups.

2. Select the references you want to add to the custom group. You can select multiple references by holding down the CTRL key while clicking on each reference with the mouse cursor. The selected references will be highlighted in blue.

3. Drag and drop the selected references into the group folder. 

Creating a Smart Group

1. In EndNote, select Create Smart Group from the Groups menu. A window will appear. Name the new group in the first box labeled Smart Group Name.

2. Build your search strategy for the group just as you would in a library database. Click the Create button.

To create a Smart Group, you can find the option within the Groups menu. You can name the new group.You will design your search strategy for the group similar to how you would in a library database. Be sure to click the Create button to ensure your progress is saved. When you search for keywords in your library, they will bed added to your smart group. As new references become available, they will be added automatically to this new group.

3. All of the references in your library that contain the same keywords found within your search strategy are now added to the smart group. New references will be added to this group set automatically as the become available.

Exporting a Bibliography into Word

A bibliography can be easily created in EndNote by exporting a Rich Text Format (.rtf) file. This useful feature is illustrated in a 75-second video shown below. You can also learn how to configure the format of a bibliography in Microsoft Word on page 80 of the Little EndNote How-To Book.

Exporting References to Excel

In order to send your EndNote references to an Excel spreadsheet, you must create a new Output style. The standard Tab Delimited style organizes references vertically rather than horizontally and so is not very useful for working with your data in Excel. 

1. To create a new Output style, choose Edit > Output style > New style

If you would like to export your EndNote references to an Excel spreadsheet, you will need to crearte a new Output Style. To do so, select the Edit button from the upper drop-down menu. Next select Output Style and then New Style.

 

2. A blank template is presented to allow you to include the selected fields into your style. You can transfer data to Excel by creating a new Bibliography through the Template.

Once you have selected to create a New Style, a blank template will appear. You can transfer data to Excel by creating a new Bibliography though the Template menu on the left hand side of the screen.

 

3. Here is an example of a new Output style called Excel for Meta-Analysis.  The Reference type is defined for a Journal Article. You can see the fields that will be collected in the output file.

In an example of a new Output Style, you will see that the Reference Type is assigned to a specific classification. In the case of this example, the Reference Type is defined for a Journal Article. These types will feature fields that will be collected in the output file. For more information, see the video below.

You can send your EndNote references to Excel using either the "Tab Delimited" output style or an Output Style that you design yourself.

To Create a New Output Style:

  1. Choose Tools > Output style > New stylemenu options for adding a New Style
  2. In the Bibliography section, select Template.
    1. Select the type of reference you want from the Reference Types drop down menu.
    2. Use the Insert Field button to add the information you want. Be sure use the Insert Field button to insert a Tab between the types of information you want.
    3. Repeat the process for every other Reference Type you expect to have.
    4. Click File.
    5. Click Save As.
    6. Give the Output Style a name. Call it whatever makes sense to you. For example, you could call it Excel for Meta-Analysis.
    7. Output Style called Excel for Meta-Analysis with templates for Generic and Journal Article reference types
    8. (Steps 8 and 9 are optional.) In Bibliography, select Author Name.
    9. Set Initials: to Full Name so that you will get all authors' full names in your Excel file.Full Name option in the Initials drop down menu.
    10. Click File.
    11. Click Save.

To Send Your EndNote References to Excel

First, you need to clean up the information in EndNote. Many of your references will include characters that interfere with the layout in Excel. You will need to make changes to get the information in the correct cells in Excel. (Thanks to the Pao Yue-Kong Library at the Hong Kong Polytechnic University for sharing how to clean up the data !)

  1. Important: Save a Copy of your EndNote Library using the button on the File tab. We need to make changes to the references that could cause problems with using other parts of EndNote. You will want to have an unedited version of Library that you can use later on. Give it a name that will help you remember if it is the edited version or the unedited version. For example, call it "Copy for Excel."Save a Copy option
  2. Go to the version you want to edit. Select all of the references you want to use. On the Library tab, select Find and Replace. Find and Replace tool
  3. Set In: to Any Field. (Note: When a source has multiple authors, this process can cause EndNote to merge the authors' names in an unexpected way. If you wish to keep the authors distinct, you may want to experiment with changing the information in a single field at a time. Repeat steps 3-8 with every field you want to change. It can be tedious because there are many fields.)
  4. In the Find field, use the Insert Special menu to select Carriage Return. There will be no visual indication that you have added something to the field, but it will be there.
  5. In the Replace field, enter a semicolon.
  6. Click Change.
  7. Find and Replace fields to replace all carriage returns with semicolons.
  8. Confirm that you want to make those replacements.
  9. Select the references you want to send to Excel.
  10. On the File menu, select Export.Export option
  11. Give your file a name.
  12. Set Save as Type to Text File (*.txt).
  13. Set Output Style to Tab Delimited or the style you created. If the style you want is not in the list, select Select Another Style and select it from that list. The styles in the long list are in alphabetical order.Export File Options, including the option to Select Another Style
  14. Click Save.
  15. Open Excel.
  16. On the Data tab, use the option to Get External Data From Text. Select the file you just created. Click Import.The Data tab has an option for From Text.
  17. Select Delimited and click Next. Radio buttons for Delimited and Fixed Width
  18. Select Tab as the delimiter.Select boxes for several possible types of delimiters
  19. (Optional: Click Next to tell Excel what kind of data format to use for each column.)
  20. Click Finish.
  21. Tell Excel where to put the data. (By default it will start with the first cell. You can select a different cell if you want.)
  22. Click OK.

Syncing Your Libraries

Your EndNote libraries can be accessed online using EndNote's Web Version, but must first be synced to your desktop version. Don't worry if you haven't created an online account. You'll have the opportunity to do so during the syncing process. 

1. In both the Mac and Windows desktop versions of EndNote there is a sync configuration tool located near the menu options. sync configuration button It has a sync now button.sync now button

2. The EndNote Login window will appear. If you already created an online EndNote account, use that login information for the EndNote Account Credentials, then click the OK button. If you have not created an account, click the Sign Up button and follow the prompts. Return to EndNote on your desktop once an account has been created and follow the login steps stated above. 

3. You may be asked if you would like to create backup of your library. Step-by-step instructions are provided on page 59 of the Little EndNote How-To Book if you choose to create a backup.

All references from your EndNote desktop library will be copied to your online library. From now on any changes made in either EndNote version will be reflected across all platforms.

Maintenance Tips

You can find these tips and much more in the EndNote LibGuide.

  • EndNote libraries are made up of two parts: the .enl file and the .data folder. These two parts must be kept together, both are needed for the library to work correctly.

  • EndNote libraries should be kept on your computer's hard drive. Storing and editing libraries on a network drive can lead to corruption and performance issues.

  • EndNote libraries should never be stored in cloud-syncing folders such as DropBox, OneDrive, Box, SugarSync, etc. Syncing folders corrupt EndNote libraries over time.

Connect with the MCPHS Libraries via Social Media: Instagram